miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|84008543|gb|DW145813.1|DW145813 CTGTTCTGTTACGCTGCCTCATTTTACAAAAGATGTAGCCAAGAGATGCCAGGAAAACCCTGGAAGGAGTATAGAGACTG
TGTTTGACTTGGTGGAAATGGAGGACGATGAGAGAAGGGAGCTGTTACAGATGTCGGATCCTCAGCTCATGGATATCGCA
AAGTTTTGCAACCGGTTCCCTAATATCGATTTGTCGTATGATGTGGTGGATGGTGACAACATTAGGGCTGGAGAGGAGTT
TACTATGGTGGTGACTCTTGAAAGGGATTTAGAGGGTAGGACTGAGGTGGGACCGGTGGATGCCCCGAGGTATCCAAAAG
GTAAAGAGGAAGGTTGGTGGTTGGTGGTTGGTGACACAAAGAGCAACCAGTTGCTTGCAATCAAGAGGGTTTCGTTGCAG
AGGAAGGCCAAGGTGAAGCTTGATAACATCACTGCTCCAAGTGATGCAGTTGGGAAGAAAAGCTTTACTCTGTATTTCAT
GTGCGACTCTTACATGGGATGCGACCAGGAGTATACTTTCTCTGTTGATGTGAAAGCAGGAACAGCGGAAGAGAATGATA
TGACATGATTTAGCAGTCAGGTCTTAGGGGTTCTCTGGTCTCTTGAAAGTCTACTGGTGAAATGGTATTATAGGAGTGGG
AGTGGGAGTGGGAGNGGTGAAGGATTCTGATTCTTGTATCTTACTTACACTTGGGCGTCAGGAGGTTCTACTGATAATGT
AGTTAGTTGATAGTTGTATTGACTGCTGAGACTAGCTTAGTAACTGTCTTGTCATCTTTTTGTTGCTTCTTTAAAGCATA
AAACATATTTATGGTGTAGGAATGAAATGTTATGACCTCACCTTACCTTAGTTTTGGGATATGATCTTTCTGAGCCTTTA
GAACAAGCAGGCAGGTTGAGGGTGTATATTATTATTAACTACAACAATTTAC




Most similar to sp|O75643|U520_HUMAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa
            helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2
          Length = 2136

 Score =  206 bits (525), Expect = 1e-52
 Identities = 102/183 (55%), Positives = 140/183 (76%), Gaps = 1/183 (0%)
 Frame = +2

Query: 14   LPHFTKDVAKRCQENPGRSIETVFDLVEMEDDERRELLQMSDPQLMDIAKFCNRFPNIDL 193
            LPHFT +  KRC +   + +E+VFD++EMED+ER  LLQ++D Q+ D+A+FCNR+PNI+L
Sbjct: 1963 LPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIEL 2019

Query: 194  SYDVVDGDNIRAGEEFTMVVTLERDLEGRTEVGPVDAPRYPKGKEEGWWLVVGDTKSNQL 373
            SY+VVD D+IR+G    ++V LER+ E     GPV AP +P+ +EEGWW+V+GD KSN L
Sbjct: 2020 SYEVVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSL 2076

Query: 374  LAIKRVSLQRKAKVKLDNITAPSDAVGKKSFTLYFMCDSYMGCDQEYTFSVDVK-AGTAE 550
            ++IKR++LQ+KAKVKLD +   + A G  ++TLYFM D+YMGCDQEY FSVDVK A T  
Sbjct: 2077 ISIKRLTLQQKAKVKLDFV---APATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDS 2133

Query: 551  END 559
            ++D
Sbjct: 2134 DSD 2136